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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG50101.1Transcriptional regulator, AraC family. (229 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.838
SCG70954.1
HAMP domain-containing protein.
    
 0.732
SCG70017.1
Signal transduction histidine kinase.
     
 0.712
SCG37288.1
Glutamate synthase (NADH) large subunit.
    
  0.698
SCG50096.1
Two-component system, OmpR family, sensor kinase.
       0.665
SCG50089.1
Two-component system, OmpR family, response regulator.
       0.660
SCG40569.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.602
SCG50109.1
Catechol 2,3-dioxygenase.
 
     0.477
carA
Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family.
    
  0.465
SCG67633.1
Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.
  
     0.436
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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