close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG50490.1DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (329 aa)    
Predicted Functional Partners:
SCG50483.1
Hypothetical protein.
       0.732
SCG50495.1
Hemerythrin HHE cation binding domain.
       0.598
SCG37288.1
Glutamate synthase (NADH) large subunit.
     
 0.539
SCG50016.1
Anti-sigma B factor antagonist.
  
     0.476
SCG70954.1
HAMP domain-containing protein.
      
 0.463
SCG70017.1
Signal transduction histidine kinase.
   
  
 0.437
SCG59021.1
Hypothetical protein.
  
     0.429
SCG58891.1
Hypothetical protein.
  
     0.426
SCG50505.1
Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase.
       0.410
SCG68400.1
DDE superfamily endonuclease.
  
     0.407
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.