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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG49701.1Transcriptional regulator, ArsR family; Belongs to the low molecular weight phosphotyrosine protein phosphatase family. (228 aa)    
Predicted Functional Partners:
SCG49691.1
Protein-tyrosine-phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
    0.952
SCG59327.1
Rhodanese-like domain.
 
 
 0.921
SCG49512.1
Glyoxylase, beta-lactamase superfamily II.
  
 
 0.909
SCG49527.1
Glyoxylase, beta-lactamase superfamily II.
  
 
 0.909
SCG66281.1
Arsenite transporter, ACR3 family.
  
  
 0.724
SCG56190.1
Anion-transporting ATPase, ArsA/GET3 family.
    
 0.714
SCG56197.1
Arsenite efflux ATP-binding protein ArsA.
    
 0.714
SCG66286.1
Arsenate reductase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
 
    0.692
SCG62383.1
Hypothetical protein.
 
 
 0.654
truA
tRNA pseudouridine38-40 synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
   
   0.651
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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