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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG51382.1Transcriptional regulator, TetR family. (200 aa)    
Predicted Functional Partners:
SCG72123.1
Hypothetical protein.
  
     0.662
SCG71732.1
Hypothetical protein.
  
     0.653
SCG51388.1
TIGR03086 family protein.
       0.541
SCG53688.1
Protein of unknown function.
  
     0.508
SCG71690.1
Nucleotidyl transferase AbiEii toxin, Type IV TA system.
  
     0.503
SCG71974.1
Nucleotidyl transferase AbiEii toxin, Type IV TA system.
  
     0.502
SCG71016.1
Hypothetical protein.
  
     0.466
SCG54067.1
Uracil-DNA glycosylase; Belongs to the uracil-DNA glycosylase (UDG) superfamily. UNG family.
  
     0.458
SCG70194.1
Zinc carboxypeptidase.
  
     0.456
SCG71010.1
Nucleotidyl transferase AbiEii toxin, Type IV TA system.
  
     0.436
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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