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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG53849.1Uncharacterized conserved protein, DUF2249 family. (270 aa)    
Predicted Functional Partners:
SCG53840.1
Hypothetical protein.
 
     0.896
SCG53829.1
Nitrite reductase (NO-forming).
 
     0.887
SCG53835.1
Hypothetical protein.
 
     0.875
SCG53844.1
Transcriptional regulator.
 
     0.803
SCG66222.1
Multicopper oxidase.
 
     0.768
SCG57737.1
Nitrite reductase (NO-forming).
 
     0.755
SCG57724.1
Predicted transcriptional regulator, ArsR family.
 
     0.724
SCG70357.1
Predicted transcriptional regulator, ArsR family.
 
     0.718
SCG53854.1
Hemerythrin HHE cation binding domain-containing protein.
 
     0.650
SCG53824.1
YwiC-like protein.
 
     0.616
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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