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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG53601.1Hypothetical protein. (295 aa)    
Predicted Functional Partners:
SCG53594.1
Prenyltransferase and squalene oxidase repeat-containing protein.
 
   
 0.971
SCG53588.1
Signal transduction histidine kinase.
 
     0.862
SCG53607.1
Cytochrome P450.
 
     0.826
SCG66425.1
DNA helicase HerA, contains HAS-barrel and ATPase domains.
  
     0.738
SCG34771.1
Hypothetical protein.
  
     0.706
SCG40463.1
Hypothetical protein.
  
     0.685
SCG63251.1
SseB protein N-terminal domain-containing protein.
  
     0.675
SCG63258.1
Hypothetical protein.
  
     0.672
SCG51506.1
ACT domain.
  
     0.671
SCG54620.1
Hypothetical protein.
  
     0.661
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.