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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG55430.1TIGR02677 family protein. (557 aa)    
Predicted Functional Partners:
SCG55412.1
TIGR02679 family protein.
 
     0.956
SCG55416.1
TIGR02680 family protein.
 
     0.956
SCG55424.1
TIGR02678 family protein.
 
     0.956
SCG52328.1
Endoglucanase.
    
  0.911
SCG62366.1
Aryl-phospho-beta-D-glucosidase BglC, GH1 family.
    
  0.911
SCG42678.1
Peptidase inhibitor I9; Belongs to the peptidase S8 family.
   
  0.844
SCG47414.1
Serine protease, subtilisin family; Belongs to the peptidase S8 family.
   
  0.844
SCG62218.1
Serine protease, subtilisin family.
   
  0.844
SCG42413.1
Hypothetical protein.
    
   0.695
SCG50410.1
Endo-1,4-beta-xylanase (glycosyl hydrolase family 10).
    
  0.518
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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