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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG55527.1Protein of unknown function. (2140 aa)    
Predicted Functional Partners:
SCG55522.1
UvrD-like helicase C-terminal domain-containing protein.
 
     0.956
SCG70272.1
SNF2 family N-terminal domain-containing protein.
 
   
 0.832
SCG70266.1
Hypothetical protein.
 
     0.816
SCG55517.1
Serine/threonine protein kinase.
       0.605
SCG42580.1
Predicted Zn-dependent protease, minimal metalloprotease (MMP)-like domain.
      
 0.569
SCG72300.1
Transposase.
  
     0.427
SCG60069.1
Transposase.
  
     0.411
SCG71692.1
Transposase.
  
     0.405
SCG55532.1
Hypothetical protein.
       0.404
SCG65808.1
Thiol-disulfide isomerase or thioredoxin.
  
     0.400
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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