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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG55551.1Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain. (285 aa)    
Predicted Functional Partners:
rplP
LSU ribosomal protein L16P; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
    
   0.908
SCG55559.1
Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain.
 
    
0.816
SCG55566.1
Ribosomal protein S12 methylthiotransferase accessory factor.
       0.773
SCG55570.1
Hypothetical protein.
       0.773
SCG55576.1
Dipeptidyl aminopeptidase/acylaminoacyl peptidase.
       0.773
SCG55583.1
Aminoglycoside 3-N-acetyltransferase.
       0.773
SCG55587.1
Aminoglycoside 6'-N-acetyltransferase.
       0.773
SCG55597.1
Predicted Zn-dependent peptidase.
       0.773
SCG55602.1
Predicted Zn-dependent peptidase.
       0.773
SCG55608.1
Major Facilitator Superfamily protein.
       0.773
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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