Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
SCG54830.1Hypothetical protein. (191 aa)    
Predicted Functional Partners:
SCG54823.1
Aminotransferase class-V.
     0.966
SCG59118.1
Tryptophan 2,3-dioxygenase.
 
 
 0.922
kynA
Tryptophan 2,3-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.
 
 
 0.922
SCG54273.1
Tryptophan 2,3-dioxygenase.
 
 
 0.917
SCG42071.1
Kynurenine formamidase.
  
 
 0.866
SCG58498.1
Kynurenine formamidase.
  
 
 0.866
SCG59130.1
Selenocysteine lyase/Cysteine desulfurase.
  
  
  0.748
SCG54837.1
Hypothetical protein.
       0.737
SCG54844.1
Tetratricopeptide repeat-containing protein.
       0.737
SCG59123.1
Tryptophan 2,3-dioxygenase (vermilion).
 
 
 0.729
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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