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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG54952.1Hypothetical protein. (217 aa)    
Predicted Functional Partners:
SCG54944.1
Hypothetical protein.
 
     0.955
SCG54959.1
Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase.
 
     0.769
SCG53688.1
Protein of unknown function.
  
     0.583
SCG54940.1
Transcriptional regulator, LacI family.
       0.542
SCG71732.1
Hypothetical protein.
  
     0.497
SCG72123.1
Hypothetical protein.
  
     0.488
SCG63833.1
Acyltransferase family protein.
  
     0.461
SCG66728.1
Dienelactone hydrolase.
  
     0.448
SCG54964.1
Hypothetical protein.
       0.413
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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