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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG56041.1Hypothetical protein. (154 aa)    
Predicted Functional Partners:
SCG56047.1
Protein of unknown function.
 
     0.829
SCG69660.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.734
SCG67702.1
Hypothetical protein.
  
     0.716
SCG50437.1
FtsK/SpoIIIE family protein.
  
     0.700
SCG56612.1
Septum formation.
  
     0.699
SCG56754.1
Tetratricopeptide repeat-containing protein.
  
     0.696
SCG65936.1
Septum formation.
  
     0.657
SCG46106.1
Predicted anti-sigma-YlaC factor YlaD, contains Zn-finger domain.
  
     0.628
SCG56460.1
FtsK/SpoIIIE family protein.
  
     0.615
SCG54856.1
Hypothetical protein.
  
     0.612
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.