Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SCG56169.1Hypothetical protein. (297 aa)    
Predicted Functional Partners:
SCG56176.1
Hypothetical protein.
       0.678
SCG39396.1
Protein of unknown function.
  
     0.668
SCG51818.1
Protein of unknown function.
  
     0.613
SCG41070.1
C-terminal four TMM region of protein-O-mannosyltransferase.
  
     0.529
pheT
phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
    0.499
SCG47774.1
Protein of unknown function.
  
     0.491
SCG70051.1
Broad specificity phosphatase PhoE.
  
     0.483
SCG61542.1
Protein of unknown function.
  
     0.449
SCG56644.1
Lsr2 protein.
  
     0.424
SCG44847.1
Lsr2 protein.
  
     0.414
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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