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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG56169.1Hypothetical protein. (297 aa)    
Predicted Functional Partners:
SCG56176.1
Hypothetical protein.
       0.717
SCG39396.1
Protein of unknown function.
  
     0.668
SCG51818.1
Protein of unknown function.
  
     0.613
SCG41070.1
C-terminal four TMM region of protein-O-mannosyltransferase.
  
     0.529
pheT
phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
  
    0.498
SCG47774.1
Protein of unknown function.
  
     0.491
SCG70051.1
Broad specificity phosphatase PhoE.
  
     0.483
SCG61542.1
Protein of unknown function.
  
     0.449
SCG70141.1
Cysteine synthase A.
     
 0.446
SCG56644.1
Lsr2 protein.
  
     0.424
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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