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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG57496.1Cellulase/cellobiase CelA1. (368 aa)    
Predicted Functional Partners:
SCG43709.1
Pectate lyase.
  
  0.774
SCG55406.1
Pectate lyase.
  
  
  0.756
SCG54354.1
Beta-xylosidase.
  
  
  0.754
SCG62309.1
Ricin-type beta-trefoil lectin domain-like.
  
     0.736
SCG45801.1
Pectate lyase.
 
  
  0.721
SCG62366.1
Aryl-phospho-beta-D-glucosidase BglC, GH1 family.
 
 
0.717
SCG52328.1
Endoglucanase.
 
 
0.699
SCG55384.1
Endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
     0.694
SCG66626.1
Endo-1,4-beta-xylanase.
 
  
  0.673
SCG69857.1
Mannan endo-1,4-beta-mannosidase.
  
 
 
0.658
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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