STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG57610.1AsnC family protein. (77 aa)    
Predicted Functional Partners:
SCG57606.1
Protein of unknown function.
 
     0.862
SCG65298.1
uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase.
  
 
 0.640
thiL
Thiamine-phosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.
       0.630
SCG40569.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.605
SCG69554.1
Phenazine biosynthesis protein phzE.
   
 
  0.585
SCG35979.1
Putative sensory transduction regulator.
  
     0.560
SCG56197.1
Arsenite efflux ATP-binding protein ArsA.
  
     0.529
SCG37909.1
Methyltransferase domain-containing protein.
  
     0.519
SCG57621.1
Acetyltransferase (GNAT) family protein.
       0.504
SCG34714.1
Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase.
    
  0.470
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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