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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG58368.1ABC-2 type transport system permease protein. (245 aa)    
Predicted Functional Partners:
SCG58361.1
ABC-2 type transport system ATP-binding protein.
 
 
  0.962
SCG67774.1
ABC-type multidrug transport system, permease component.
  
  
  0.487
SCG54071.1
ABC-type multidrug transport system, permease component.
  
  
 
0.485
SCG58355.1
AHBA synthesis associated protein.
       0.485
SCG62988.1
ABC-2 type transport system permease protein.
 
  
  0.484
SCG33760.1
ABC-2 type transport system ATP-binding protein.
  
 
  0.475
SCG41747.1
ABC-2 type transport system permease protein.
  
  
  0.468
SCG41311.1
Carbohydrate ABC transporter membrane protein 1, CUT1 family.
     
  0.466
SCG57114.1
Oleandomycin transport system permease protein.
  
  
  0.464
SCG33761.1
ABC-2 type transport system permease protein.
  
  
 
0.454
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.