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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG58382.1Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase. (277 aa)    
Predicted Functional Partners:
SCG38003.1
5,10-methylenetetrahydrofolate reductase (NAD(P)); Belongs to the methylenetetrahydrofolate reductase family.
  
 
  0.771
SCG68734.1
Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED.
  
 
 0.735
ahcY
Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
  
 
  0.610
SCG34026.1
Predicted unusual protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family.
   
 
 0.608
SCG64415.1
O-antigen ligase like membrane protein.
  
 
 0.557
SCG63535.1
ADP-heptose:LPS heptosyltransferase.
  
 
 0.456
SCG68770.1
ADP-heptose:LPS heptosyltransferase.
  
 
 0.456
SCG40961.1
UTP--glucose-1-phosphate uridylyltransferase.
    
  0.422
SCG58389.1
Alpha/beta hydrolase family protein.
       0.419
SCG61505.1
Lipopolysaccharide kinase (Kdo/WaaP) family protein.
    
  0.416
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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