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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG58528.1Act minimal PKS chain-length factor (CLF/KS beta); Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (402 aa)    
Predicted Functional Partners:
accD
acetyl-CoA carboxylase carboxyl transferase subunit beta; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
 
 
 0.989
SCG46370.1
Rifamycin polyketide synthase modules 9 and 10.
  
0.978
SCG46381.1
Acyl transferase domain-containing protein.
  
 0.978
SCG58775.1
Ketoacyl-synthetase C-terminal extension.
  
0.978
SCG72244.1
Phosphopantetheine attachment site.
  
 0.978
SCG58535.1
Act minimal PKS acyl carrier protein.
 
  0.972
SCG71612.1
Erythronolide synthase docking.
 
 0.972
SCG54266.1
Acyl transferase domain-containing protein.
  
 0.971
SCG71112.1
Ketoacyl-synthetase C-terminal extension.
  
0.968
SCG71606.1
Acyl transferase domain-containing protein.
  
0.968
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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