STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG58668.1Winged helix DNA-binding domain-containing protein. (389 aa)    
Predicted Functional Partners:
SCG33808.1
3',5'-cyclic AMP phosphodiesterase CpdA.
  
     0.578
SCG66545.1
Hypothetical protein.
  
    0.549
SCG58394.1
Predicted ATPase.
  
     0.512
SCG58673.1
Hypothetical protein.
       0.507
SCG44825.1
Hypothetical protein.
  
    0.482
SCG60541.1
Ribosomal protein S18 acetylase RimI.
  
     0.470
SCG39647.1
Transcriptional regulator, TetR family.
  
     0.447
SCG68044.1
Transposase.
  
     0.445
SCG39772.1
Hypothetical protein.
  
     0.401
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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