STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG59141.1Putative peptidoglycan binding domain-containing protein. (322 aa)    
Predicted Functional Partners:
SCG62325.1
Repeat domain-containing protein.
  
     0.772
SCG47894.1
N-acetylmuramoyl-L-alanine amidase.
 
  
 0.705
SCG69111.1
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.
  
 
 0.676
SCG48018.1
Membrane carboxypeptidase (penicillin-binding protein).
  
  
 0.657
SCG47360.1
Cell elongation-specific peptidoglycan D,D-transpeptidase.
  
  
 0.643
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
 
 0.637
SCG65284.1
Membrane carboxypeptidase (penicillin-binding protein).
  
  
 0.635
SCG33808.1
3',5'-cyclic AMP phosphodiesterase CpdA.
  
 
  0.606
SCG37714.1
Peptidoglycan synthetase FtsI.
  
  
 0.606
SCG67324.1
Membrane carboxypeptidase (penicillin-binding protein).
  
  
 0.598
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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