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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG59809.1Hypothetical protein. (181 aa)    
Predicted Functional Partners:
SCG59814.1
Protein of unknown function.
       0.509
SCG59819.1
LysM domain-containing protein.
       0.509
SCG59826.1
Putative Flp pilus-assembly TadE/G-like.
       0.455
SCG59832.1
TadE-like protein.
       0.455
SCG59837.1
TadE-like protein.
       0.455
SCG59843.1
Hypothetical protein.
       0.455
SCG59849.1
Type II secretion system (T2SS), protein F.
       0.413
SCG59856.1
Flp pilus assembly protein TadB.
       0.413
SCG59863.1
Pilus assembly protein, ATPase of CpaF family.
       0.413
SCG59870.1
Hypothetical protein.
       0.413
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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