STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG59886.1Hypothetical protein. (123 aa)    
Predicted Functional Partners:
SCG59881.1
Hypothetical protein.
 
     0.952
SCG59875.1
SAF domain-containing protein.
 
     0.950
SCG59856.1
Flp pilus assembly protein TadB.
 
     0.935
SCG59837.1
TadE-like protein.
 
     0.920
SCG59849.1
Type II secretion system (T2SS), protein F.
 
     0.920
SCG59826.1
Putative Flp pilus-assembly TadE/G-like.
 
     0.916
SCG59870.1
Hypothetical protein.
 
     0.914
SCG59819.1
LysM domain-containing protein.
 
     0.909
SCG59832.1
TadE-like protein.
 
     0.879
SCG59863.1
Pilus assembly protein, ATPase of CpaF family.
 
     0.813
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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