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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG60955.1Short-chain dehydrogenase. (314 aa)    
Predicted Functional Partners:
SCG60959.1
Threonine dehydrogenase.
  
 
  0.802
SCG54266.1
Acyl transferase domain-containing protein.
  
 
 0.796
SCG54250.1
Amino acid adenylation domain-containing protein/thioester reductase domain-containing protein.
  
 
 0.735
SCG55252.1
3-oxoacyl-[acyl-carrier protein] reductase.
  
 
  0.713
SCG54294.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
  
 
 0.676
SCG58800.1
Rifamycin polyketide synthase modules 1, 2 and 3.
   
 0.676
SCG70718.1
Polyketide synthase 12.
   
 0.676
SCG71526.1
Candicidin polyketide synthase FscB.
   
 0.676
SCG37288.1
Glutamate synthase (NADH) large subunit.
    
  0.665
SCG71117.1
Amino acid adenylation domain-containing protein.
  
 
 0.658
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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