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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG60541.1Ribosomal protein S18 acetylase RimI. (157 aa)    
Predicted Functional Partners:
SCG55278.1
Predicted kinase.
  
     0.629
SCG47207.1
ADP-ribose pyrophosphatase YjhB, NUDIX family.
  
     0.627
SCG40505.1
Serine/threonine protein kinase.
  
     0.621
SCG44825.1
Hypothetical protein.
  
     0.611
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
    
  0.600
SCG60536.1
Hypothetical protein.
       0.563
SCG61262.1
Hypothetical protein.
  
     0.563
SCG45522.1
Glyoxylase, beta-lactamase superfamily II.
  
     0.535
SCG45147.1
Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family.
  
     0.475
SCG58668.1
Winged helix DNA-binding domain-containing protein.
  
     0.470
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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