STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG60645.1Spore coat polysaccharide biosynthesis protein SpsG, predicted glycosyltransferase. (341 aa)    
Predicted Functional Partners:
SCG60702.1
N-acetylneuraminate synthase.
 
 
 0.975
SCG60650.1
Spore coat polysaccharide biosynthesis protein SpsF.
 
  
 0.971
SCG60668.1
UDP-N-acetylglucosamine 4,6-dehydratase.
 
   
 0.861
SCG60658.1
Hypothetical protein.
 
     0.856
SCG60678.1
Protein N-acetyltransferase, RimJ/RimL family.
 
 
 0.849
SCG60654.1
Hypothetical protein.
 
     0.840
SCG60665.1
Perosamine synthetase; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.825
SCG60642.1
DNA-N1-methyladenine dioxygenase.
       0.787
SCG60686.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
 
     0.714
SCG50869.1
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
  
    0.694
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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