Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SCG60737.1Peptidase_C39 like family protein. (278 aa)    
Predicted Functional Partners:
SCG42440.1
Hypothetical protein.
  
     0.711
SCG63027.1
Hypothetical protein.
  
     0.702
SCG50127.1
Arylsulfatase A.
  
     0.700
SCG42883.1
Lipoprotein LpqB beta-propeller domain-containing protein.
  
     0.671
SCG64229.1
Glyoxalase-like domain-containing protein.
  
     0.670
SCG60800.1
Hypothetical protein.
  
     0.662
SCG47108.1
Hypothetical protein.
  
     0.660
SCG33833.1
Winged helix-turn helix.
  
     0.641
SCG71434.1
Carboxypeptidase regulatory-like domain-containing protein.
  
     0.636
SCG65967.1
Cytidylate kinase, putative.
  
     0.600
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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