STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG61770.1Acetyltransferase (GNAT) family protein. (306 aa)    
Predicted Functional Partners:
SCG61775.1
Subtilase family protein.
       0.714
SCG62694.1
Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
     0.680
SCG53688.1
Protein of unknown function.
  
     0.581
SCG48721.1
PH domain-containing protein.
  
     0.567
SCG47633.1
WD40-like Beta Propeller Repeat.
  
     0.544
SCG61765.1
Hypothetical protein.
       0.529
SCG61779.1
Glycerol-3-phosphate dehydrogenase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
  
    0.514
SCG71732.1
Hypothetical protein.
  
     0.493
SCG72123.1
Hypothetical protein.
  
     0.461
SCG53594.1
Prenyltransferase and squalene oxidase repeat-containing protein.
  
     0.424
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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