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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG61794.1Transcriptional regulator, HxlR family. (215 aa)    
Predicted Functional Partners:
SCG65091.1
Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain.
   
    0.768
SCG48462.1
Transcriptional attenuator, LytR family.
   
    0.714
SCG36726.1
Predicted transcriptional regulator, ArsR family.
   
    0.649
SCG41277.1
Transcriptional regulator, GntR family.
   
    0.649
SCG58376.1
Uncharacterized conserved protein PhnB, glyoxalase superfamily.
  
    0.620
cobB-2
NAD-dependent protein deacetylase, SIR2 family; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
  
    0.620
cobB-3
NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
  
    0.620
SCG49846.1
PemK-like, MazF-like toxin of type II toxin-antitoxin system.
   
    0.560
SCG53740.1
Uncharacterized conserved protein PhnB, glyoxalase superfamily.
   
    0.560
SCG54732.1
Transcriptional regulator, AsnC family.
   
    0.552
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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