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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG61587.1Gas vesicle synthesis protein GvpO. (113 aa)    
Predicted Functional Partners:
gvpA
Gas vesicle protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth. GvpA type proteins form the essential core of the structure.
 
   
 0.964
SCG61609.1
Gas vesicle protein K.
 
   
 0.963
SCG61576.1
Gas vesicle synthesis protein GvpL/GvpF.
 
   
 0.957
SCG61590.1
Gas vesicle protein; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
 
   
 0.957
SCG61604.1
Gas vesicle protein.
 
   
 0.957
SCG61579.1
WW domain binding protein 11.
 
     0.956
SCG61598.1
Gas vesicle synthesis protein GvpL/GvpF.
 
     0.956
SCG61566.1
Uncharacterized membrane protein.
 
     0.954
SCG61561.1
Hypothetical protein.
 
     0.940
SCG61556.1
Acetyltransferase (GNAT) domain-containing protein.
       0.408
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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