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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG62268.1Predicted kinase, aminoglycoside phosphotransferase (APT) family. (294 aa)    
Predicted Functional Partners:
SCG52169.1
Acyl-CoA synthetase (NDP forming).
    
  0.665
SCG51838.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.653
SCG55138.1
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.
  
 0.653
SCG62261.1
Methyltransferase domain-containing protein.
       0.636
SCG62258.1
Hypothetical protein.
       0.608
SCG62272.1
Transposase DDE domain-containing protein.
       0.594
SCG53557.1
Catechol 2,3-dioxygenase.
  
     0.478
SCG54051.1
Acetyl-CoA carboxylase, carboxyltransferase component.
   
 
  0.477
SCG66533.1
Acetyl/propionyl-CoA carboxylase, alpha subunit.
   
 
  0.477
SCG58800.1
Rifamycin polyketide synthase modules 1, 2 and 3.
  
 0.433
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.