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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG62280.1Two component transcriptional regulator, LuxR family. (217 aa)    
Predicted Functional Partners:
SCG70954.1
HAMP domain-containing protein.
  
 0.972
SCG62286.1
Signal transduction histidine kinase.
 
  0.967
SCG70017.1
Signal transduction histidine kinase.
   
 0.895
SCG34418.1
Signal transduction histidine kinase.
 
 0.877
SCG50740.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
  0.851
SCG37767.1
Signal transduction histidine kinase.
  
  0.850
SCG44744.1
Signal transduction histidine kinase.
 
  0.842
SCG49485.1
Signal transduction histidine kinase.
  
  0.822
SCG38182.1
Signal transduction histidine kinase.
  
  0.820
SCG66411.1
Signal transduction histidine kinase.
 
  0.816
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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