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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG62320.1Two component transcriptional regulator, LuxR family. (235 aa)    
Predicted Functional Partners:
SCG70954.1
HAMP domain-containing protein.
  
 0.972
SCG62314.1
Signal transduction histidine kinase.
 
  0.948
SCG70017.1
Signal transduction histidine kinase.
   
 0.895
SCG48428.1
PAS/PAC sensor signal transduction histidine kinase.
  
 0.682
SCG69938.1
GAF domain-containing protein.
  
 0.664
SCG40954.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.623
SCG34418.1
Signal transduction histidine kinase.
 
 0.621
SCG35119.1
Diguanylate cyclase/phosphodiesterase.
  
 0.578
SCG38182.1
Signal transduction histidine kinase.
  
  0.571
SCG49485.1
Signal transduction histidine kinase.
  
  0.560
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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