STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG63736.1Zinc transport system substrate-binding protein; Belongs to the bacterial solute-binding protein 9 family. (316 aa)    
Predicted Functional Partners:
SCG63740.1
Zinc transport system ATP-binding protein.
 
 
 0.999
SCG63743.1
Zinc transport system permease protein.
 
 
 0.999
SCG63756.1
Zinc uptake regulator, Fur family; Belongs to the Fur family.
 
  
 0.860
SCG52187.1
Iron (metal) dependent repressor, DtxR family.
  
 
 0.795
rpmB
LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.790
rpsZ
SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
  
  
 0.787
SCG63750.1
Transcriptional regulator, ArsR family.
       0.739
SCG70209.1
Iron complex transport system ATP-binding protein.
  
 
 0.691
SCG36834.1
Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
     
 0.632
SCG63731.1
Hypothetical protein.
       0.625
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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