STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG64823.1Uncharacterized protein YcnI. (277 aa)    
Predicted Functional Partners:
SCG54933.1
Putative copper export protein.
 
  
 0.955
SCG66850.1
Copper transport protein.
 
  
 0.945
SCG54925.1
Copper-binding protein CopC (methionine-rich).
  
  
 0.936
SCG39296.1
Hypothetical protein.
  
  
 0.629
SCG70553.1
Hypothetical protein.
  
  
 0.629
SCG59016.1
Hypothetical protein.
  
  
 0.623
SCG58896.1
Hypothetical protein.
  
  
 0.600
thrS
threonyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.499
SCG67824.1
MerR family regulatory protein.
  
     0.426
SCG63844.1
Hypothetical protein.
  
     0.400
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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