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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG65091.1Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain. (315 aa)    
Predicted Functional Partners:
SCG65084.1
Nicotinamidase-related amidase.
 
    0.971
SCG53740.1
Uncharacterized conserved protein PhnB, glyoxalase superfamily.
 
    0.816
SCG48462.1
Transcriptional attenuator, LytR family.
   
    0.800
SCG36726.1
Predicted transcriptional regulator, ArsR family.
   
    0.784
cobB-2
NAD-dependent protein deacetylase, SIR2 family; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
   
    0.775
cobB-3
NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
   
    0.775
SCG54732.1
Transcriptional regulator, AsnC family.
   
    0.773
SCG48964.1
Transcriptional regulator, HxlR family.
   
    0.768
SCG54664.1
Transcriptional regulator, HxlR family.
   
    0.768
SCG58376.1
Uncharacterized conserved protein PhnB, glyoxalase superfamily.
  
    0.768
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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