STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG66385.1Saccharopine dehydrogenase NADP binding domain-containing protein. (380 aa)    
Predicted Functional Partners:
SCG66379.1
Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain.
 
    0.646
SCG69615.1
Probable F420-dependent oxidoreductase, Rv3093c family.
  
  
  0.620
SCG42685.1
ABC-2 family transporter protein.
  
     0.595
SCG70730.1
Erythromycin 3''-O-methyltransferase.
   
    0.589
SCG68171.1
MerR HTH family regulatory protein.
  
     0.578
SCG48721.1
PH domain-containing protein.
  
     0.568
SCG39001.1
Protein of unknown function.
  
     0.522
SCG70095.1
DNA-binding transcriptional regulator, MarR family.
  
     0.514
SCG59796.1
Hypothetical protein.
  
     0.508
SCG55956.1
Transcriptional regulator, TetR family.
  
     0.502
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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