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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG66435.1Low temperature requirement protein LtrA. (448 aa)    
Predicted Functional Partners:
SCG45313.1
Low temperature requirement A protein (LtrA).
  
     0.655
SCG55102.1
Polyketide cyclase / dehydrase and lipid transport.
  
     0.530
SCG48135.1
Protein of unknown function.
  
     0.527
SCG63689.1
Peptidase_C39 like family protein.
  
     0.485
SCG60737.1
Peptidase_C39 like family protein.
  
     0.477
SCG60138.1
Peptidase_C39 like family protein.
  
     0.465
SCG62594.1
Peptidase_C39 like family protein.
  
     0.463
SCG53552.1
Peptidase_C39 like family protein.
  
     0.460
SCG66422.1
Hypothetical protein.
       0.458
SCG66425.1
DNA helicase HerA, contains HAS-barrel and ATPase domains.
       0.458
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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