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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG66861.1RNA polymerase sigma-70 factor, ECF subfamily. (195 aa)    
Predicted Functional Partners:
SCG66872.1
Protein-disulfide isomerase.
  
    0.833
SCG66877.1
Hypothetical protein.
       0.831
SCG66857.1
Predicted anti-sigma-YlaC factor YlaD, contains Zn-finger domain.
 
   0.766
SCG66868.1
Methylamine utilisation protein MauE.
       0.735
SCG71711.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.730
SCG71022.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.728
SCG39176.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.701
SCG70633.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.701
SCG63202.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
   
 0.665
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.624
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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