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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG67728.1Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family. (225 aa)    
Predicted Functional Partners:
SCG63833.1
Acyltransferase family protein.
 
 
 0.898
SCG70930.1
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.
 
 
0.821
SCG52328.1
Endoglucanase.
  
 
 0.791
SCG62366.1
Aryl-phospho-beta-D-glucosidase BglC, GH1 family.
  
 
 0.791
SCG38066.1
Chitinase family 18; Belongs to the glycosyl hydrolase 18 family.
    
 0.713
SCG43085.1
Xylan 1,4-beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
 
 0.700
SCG37982.1
Glycosyltransferase like family 2.
  
 
 0.694
SCG63541.1
Glycosyl transferase family 2.
  
 
 0.694
SCG64129.1
Glycosyltransferase like family 2.
  
 
 0.694
SCG43666.1
Hypothetical protein.
    
 0.676
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.