STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG68471.1Snapalysin. (396 aa)    
Predicted Functional Partners:
SCG63715.1
Hypothetical protein.
    
 0.974
SCG53688.1
Protein of unknown function.
    
 0.943
SCG70194.1
Zinc carboxypeptidase.
  
 
 0.926
SCG50355.1
Hypothetical protein.
    
 0.810
SCG49826.1
Hypothetical protein.
   
  0.726
SCG53428.1
Serpin (serine protease inhibitor).
   
  0.726
SCG44458.1
Hypothetical protein.
    
 
 0.675
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
    
 
 0.675
SCG65482.1
PQQ-like domain-containing protein.
    
 
 0.675
SCG54250.1
Amino acid adenylation domain-containing protein/thioester reductase domain-containing protein.
    
 0.654
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.