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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCG68713.1Phytoene dehydrogenase-related protein. (534 aa)    
Predicted Functional Partners:
SCG68193.1
Phytoene synthase.
 
 
 0.906
SCG68728.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
 
    0.724
SCG61473.1
Isorenieratene synthase.
 
  
 0.652
SCG68706.1
Succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase.
  
 
  0.642
SCG37964.1
Spheroidene monooxygenase.
 
 
 0.619
SCG51838.1
3-hydroxyacyl-CoA dehydrogenase.
   
 
  0.604
SCG55138.1
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.
   
 
  0.604
SCG58800.1
Rifamycin polyketide synthase modules 1, 2 and 3.
    
 0.534
SCG70718.1
Polyketide synthase 12.
    
 0.534
SCG71526.1
Candicidin polyketide synthase FscB.
    
 0.534
Your Current Organism:
Micromonospora halophytica
NCBI taxonomy Id: 47864
Other names: ATCC 27596, DSM 43171, IFO 14112, JCM 3125, M. halophytica, Micromonospora halophytica subsp. halophytica, NBRC 14112, NRRL 2998
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