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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL12891.1Hypothetical protein. (377 aa)    
Predicted Functional Partners:
SCL12894.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
 
   0.914
SCL12889.1
Signal transduction histidine kinase.
     0.898
SCL16660.1
Signal transduction histidine kinase.
  
 0.812
SCL15588.1
PAS fold-containing protein.
   
 0.682
SCL26115.1
DNA helicase HerA, contains HAS-barrel and ATPase domains.
  
     0.674
SCL23016.1
Hypothetical protein.
  
     0.630
SCL12896.1
Hypothetical protein.
       0.607
SCL12888.1
Hypothetical protein.
       0.529
SCL26120.1
Hypothetical protein.
  
     0.525
SCL30145.1
Hypothetical protein.
  
     0.511
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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