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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SCL12943.1DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains. (298 aa)    
Predicted Functional Partners:
murQ
N-acetylmuramic acid 6-phosphate etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate.
 
  
 0.940
SCL18177.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.683
SCL24522.1
BadF-type ATPase.
 
     0.614
SCL22836.1
2-oxoisovalerate dehydrogenase E1 component.
     
  0.564
SCL12945.1
Nucleoside-diphosphate-sugar epimerase.
       0.480
zwf
Glucose-6-phosphate 1-dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
    
 0.438
SCL27734.1
BadF-type ATPase.
 
     0.434
SCL19284.1
Mannose-6-phosphate isomerase, type 1.
  
 
  0.432
SCL23839.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 0.432
SCL24891.1
Mannose-6-phosphate isomerase, type 1.
  
 
  0.432
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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