STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL13310.1Peptidase S24-like. (115 aa)    
Predicted Functional Partners:
SCL13312.1
Nickel superoxide dismutase.
 
   
 0.919
SCL20404.1
Signal peptidase I; Belongs to the peptidase S26 family.
  
 
  0.785
SCL22432.1
Hypothetical protein.
  
 
   0.703
SCL13308.1
Malate dehydrogenase (oxaloacetate-decarboxylating).
       0.660
SCL13316.1
Serine/threonine-protein kinase RsbW.
 
     0.649
SCL13314.1
Acetyltransferase (GNAT) family protein.
       0.587
SCL31559.1
Hypothetical protein.
  
     0.574
SCL14549.1
ABC-2 type transport system ATP-binding protein.
  
     0.556
SCL23390.1
Hypothetical protein.
  
     0.529
SCL29416.1
SCP-2 sterol transfer family protein.
  
     0.510
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.