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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL13717.1Probable F420-dependent oxidoreductase, Rv2161c family. (352 aa)    
Predicted Functional Partners:
SCL31021.1
Amino acid adenylation domain-containing protein.
   
 0.878
SCL13720.1
Transglutaminase-like superfamily protein.
 
  
 0.877
SCL13716.1
Transcriptional regulator, GntR family.
 
     0.813
SCL19174.1
Coenzyme F420-0:L-glutamate ligase / coenzyme F420-1:gamma-L-glutamate ligase.
 
  
 0.790
SCL13713.1
Quinol monooxygenase YgiN.
 
   
 0.754
SCL19175.1
LPPG:FO 2-phospho-L-lactate transferase.
 
   
 0.727
SCL26368.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
   
 0.703
SCL25302.1
Phosphopantetheine attachment site.
   
 0.702
SCL13726.1
Hypothetical protein.
 
    0.701
SCL13711.1
Predicted arabinose efflux permease, MFS family.
 
     0.671
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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