STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL14404.1Uncharacterized conserved protein, DUF849 family. (275 aa)    
Predicted Functional Partners:
SCL27235.1
3-aminobutyryl-CoA ammonia-lyase.
  
  0.993
SCL27248.1
L-erythro-3,5-diaminohexanoate dehydrogenase.
 
  
  0.975
SCL14406.1
Hypothetical protein; Belongs to the GcvT family.
       0.836
SCL14408.1
Nickel uptake regulator, Fur family; Belongs to the Fur family.
       0.836
SCL14401.1
L-asparaginase II.
       0.827
SCL27241.1
Beta-lysine 5,6-aminomutase alpha subunit.
 
   
 0.795
SCL27238.1
Beta-lysine 5,6-aminomutase beta subunit.
 
     0.787
SCL29112.1
Kynurenine formamidase.
  
    0.738
SCL27231.1
Conserved hypothetical protein.
 
     0.720
SCL27252.1
L-lysine 2,3-aminomutase.
 
   
 0.702
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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