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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL14744.1Hypothetical protein. (53 aa)    
Predicted Functional Partners:
SCL31021.1
Amino acid adenylation domain-containing protein.
    
 0.754
SCL27811.1
Acyl carrier protein.
    
 0.743
SCL30334.1
Acyl transferase domain-containing protein.
   
 0.716
SCL17020.1
Acyl transferase domain-containing protein.
   
 0.695
SCL12798.1
Hypothetical protein; Partial gene; manually curated.
    
 0.692
SCL26368.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
    
 0.636
SCL25302.1
Phosphopantetheine attachment site.
    
 0.613
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
     
 0.613
lysS
lysyl-tRNA synthetase, class II; Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.600
SCL15356.1
Methyltransferase domain-containing protein.
    
 0.599
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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