STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL16307.1Hypothetical protein. (279 aa)    
Predicted Functional Partners:
SCL16310.1
DNA binding domain-containing protein, excisionase family.
      0.787
SCL22914.1
Transcriptional regulator, contains XRE-family HTH domain.
  
     0.682
SCL14802.1
Hypothetical protein.
  
     0.678
SCL18604.1
Hypothetical protein.
  
     0.659
SCL17169.1
Protein of unknown function.
  
     0.627
SCL16303.1
Valine dehydrogenase (NAD+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
       0.625
SCL20097.1
Protein of unknown function.
  
     0.616
SCL22911.1
Bifunctional DNA primase/polymerase, N-terminal.
  
     0.615
SCL27207.1
Hypothetical protein.
  
     0.606
SCL31117.1
Streptomyces sporulation and cell division protein, SsgA.
  
     0.590
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.