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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL16576.1P-loop protein of unknown function. (325 aa)    
Predicted Functional Partners:
SCL25175.1
D-methionine transport system permease protein.
  
 0.989
SCL25180.1
D-methionine transport system substrate-binding protein.
  
 0.985
SCL16573.1
P-loop protein of unknown function.
 
     0.949
SCL16578.1
Hypothetical protein.
       0.795
SCL28538.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
 0.758
SCL31680.1
Iron (metal) dependent repressor, DtxR family.
    
   0.658
SCL19014.1
Cystathionine beta-synthase.
    
  0.616
SCL16580.1
TerB-C domain-containing protein.
       0.578
SCL16585.1
ATP-dependent helicase Lhr and Lhr-like helicase.
       0.578
SCL16583.1
P-loop protein of unknown function.
       0.569
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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