STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCL16588.1Hypothetical protein. (92 aa)    
Predicted Functional Partners:
SCL16593.1
Nucleoside-diphosphate-sugar epimerase.
 
     0.688
SCL12913.1
Hypothetical protein.
  
     0.655
SCL28291.1
Hypothetical protein.
  
     0.545
SCL26583.1
Histidine kinase-like ATPase domain-containing protein.
  
     0.509
SCL30946.1
Hypothetical protein.
  
     0.461
SCL26588.1
MEDS: MEthanogen/methylotroph, DcmR Sensory domain.
  
     0.446
SCL16637.1
Serine phosphatase RsbU, regulator of sigma subunit.
  
     0.412
Your Current Organism:
Micromonospora inyonensis
NCBI taxonomy Id: 47866
Other names: ATCC 27600, DSM 46123, JCM 3188, M. inyonensis, Micromonospora inyoensis, Micromonospora inyonensis Kroppenstedt et al. 2005, NBRC 13156, NRRL 3292
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.